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Brady McDonough 3 years ago
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1-STUMPY-basics/README.md
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@ -9,10 +9,13 @@ return overlapping motifs.
I remember reading that the distances returned by a matrix profile have an upper I remember reading that the distances returned by a matrix profile have an upper
bound. I should see what calculating my distance cutoff with that upper bound bound. I should see what calculating my distance cutoff with that upper bound
looks like rather than calculating off the top motif like I do now. looks like rather than calculating off the top motif like I do now.
If two motifs overlap it could be that the window is too small. I don't know what If two motifs overlap it could be that the window is too small. I don't know what
other criteria to test yet to tell me if that is the case or not. I do know that other criteria to test yet to tell me if that is the case or not. I do know that
this can be determined in discovery stages using a Pan-matrix profile (PMP). this can be determined in discovery stages using a Pan-matrix profile (PMP).
Some form of reference following should occur to ensure that I'm grabbing motifs Some form of reference following should occur to ensure that I'm grabbing motifs
which actually relate to one another. which actually relate to one another.
Currently the function is quite primitive. It should be packaged and iterated on Currently the function is quite primitive. It should be packaged and iterated on
using the data in further sections of the tutorial. using the data in further sections of the tutorial.
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